SNP Profiles of ICS 16 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
11._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
12._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
13._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
14._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
15._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
16._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
17._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
18._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
19._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
20._ICS_16	CT	AA	GG	CC	TT	AA	CC	TT	CT	TT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
1._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
2._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
3._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
4._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
5._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
6._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
7._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
8._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
9._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
10._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
11._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
12._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
13._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
14._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
15._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
16._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
17._GC-08-067-1-89	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
18._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
19._ICS_16	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
20._ICS_16	CT	AA	GG	TT	CC	CG	GT	GG	TT	CC	GG	TT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
1._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
2._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
3._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
4._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
5._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
6._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
7._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
8._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
9._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
10._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
11._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
12._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
13._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
14._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
15._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
16._ICS_16	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
17._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
18._GC-08-067-1-89	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
19._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
20._ICS_16	AG	GG	TT	CC	AG	CC	AC	CC	GT	AC	AT	GG	X_X	X_X

Input profile: ICS_16

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Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

2._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

6._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

7._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._ICS_16 GC-08-067-1-89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

10._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

11._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

12._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

13._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

14._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

15._ICS_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

16._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

17._ICS_16 GC-08-067-1-89

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

18._ICS_16 GC-08-067-1-89

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

19._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

20._ICS_16

65 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 1 C0199 2A

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25